| The Lonely 1 | Being There | 112 |
| The Long Cut | Anodyne | 91 |
| The New World | Cover | 1 |
| The Shape I'm In | Cover | 1 |
| The Thanks I Get | Sky Blue Sky Tour EP | 39 |
| The Weight | Cover | 1 |
| Theologians | A Ghost Is Born | 280 |
| Too Far Apart | A.M. | 86 |
| True Love Will Find You In the End | Alpha Mike Foxtrot: Rare Tracks 1994-2014 | 18 |
| Turn Around and Come Back To Me | | 4 |
| Twinkle Twinkle Little Star | Cover | 2 |
| Unknown??? | | 6 |
| Via Chicago | Summerteeth | 377 |
| Wait Up | March 16-20, 1992 | 75 |
| Walk On | Cover | 4 |
| Walk Where He Walked | Down By The Old Mainstream | 25 |
| Walken | Sky Blue Sky | 361 |
| Walt Whitman's Niece | Mermaid Avenue | 1 |
| War On War | Yankee Hotel Foxtrot | 552 |
| Watch Me Fall | Still Feel Gone | 15 |
| We're Just Friends | Summerteeth | 42 |
| We've Been Had | Anodyne | 133 |
| What Light | Sky Blue Sky | 42 |
| What's The World Got In Store | Being There | 24 |
| When I'm Gone | | 1 |
| When The Roses Bloom Again | Chelsea Walls | 77 |
| When You Wake Up Feeling Old | Summerteeth | 47 |
| Wherever | | 10 |
| Who Were You Thinking Of | Alpha Mike Foxtrot: Rare Tracks 1994-2014 | 21 |
| Whole Love | The Whole Love | 138 |
| Why Would You Wanna Live | Being There | 88 |
| Wilco (The Song) | Wilco (the album) | 98 |
| Will You Still Love Me Tomorrow | Cover | 20 |
| Wishful Thinking | A Ghost Is Born | 44 |
| Won't Get Fooled Again | Cover | 5 |
| Woodgrain | More Like The Moon EP | 3 |
| You And I | Wilco (the album) | 21 |
| You Are My Face | Sky Blue Sky | 250 |
| You Are Not Alone | | 3 |
| You Never Know | Wilco (the album) | 74 |
| You Were Wrong | Loose Fur | 8 |
| Ziggy Stardust | Cover | 8 |
| new song (Let's Fight) | | 3 |