| One By One | Mermaid Avenue | 120 |
| On And On And On | Sky Blue Sky | 41 |
| Oklahoma USA | Cover | 6 |
| Nothing'severgonnastandinmyway(again) | Summerteeth | 87 |
| Not For The Season | | 149 |
| No Sense In Lovin' | Anodyne | 24 |
| No Romance | | 1 |
| No Church Tonight | | 1 |
| New Years Countdown | | 1 |
| New Madrid | Anodyne | 275 |
| My Darling | Summerteeth | 45 |
| Muzzle Of Bees | A Ghost Is Born | 260 |
| More Like The Moon | More Like The Moon EP | 8 |
| Monday | Being There | 333 |
| Modern World | | 1 |
| Misunderstood | Being There | 477 |
| Love Will Keep Us Together | Cover | 2 |
| Lost Love | Weird Tales | 21 |
| Livin' After Midnight | Cover | 1 |
| Listen To Her Heart | Cover | 21 |
| Lies of the Living Dead | | 3 |
| Let's Not Get Carried Away | Sky Blue Sky Tour EP | 16 |
| Let's Hear It For Rock and Roll | | 18 |
| Less Than You Think | A Ghost Is Born | 62 |
| Leave Me (Like You Found Me) | Sky Blue Sky | 1 |
| Laminated Cat | Loose Fur | 66 |
| Kingpin | Being There | 332 |
| Kicking Television | A Ghost Is Born | 55 |
| Kamera | Yankee Hotel Foxtrot | 215 |
| Just Wanted to Thank You | | 2 |
| Just A Kid | The SpongeBob SquarePants Movie | 14 |
| Jumping Jack Flash | Cover | 1 |
| John Wesley Harding | Cover | 14 |
| Jesus, Etc. | Yankee Hotel Foxtrot | 671 |
| James Alley Blues | Alpha Mike Foxtrot: Rare Tracks 1994-2014 | 30 |
| It's Just That Simple | A.M. | 59 |
| Intro | | 5 |
| Interview | | 22 |
| In The Street | Cover | 8 |
| In A Future Age | Summerteeth | 44 |
| Impossible Germany | Sky Blue Sky | 417 |
| Immigrant Song | Cover | 27 |
| If That's Alright | Still Feel Gone | 21 |
| I'm The Man Who Loves You | Yankee Hotel Foxtrot | 829 |
| I'm Going Home | | 1 |
| I'm Always In Love | Summerteeth | 376 |
| I'm A Wheel | A Ghost Is Born | 294 |
| I'll Fight | Wilco (the album) | 53 |
| I Wish I Was Your Mother | Cover | 7 |
| I Want You To Want Me | Cover | 1 |
| I Wanna Be Your Dog | | 4 |
| I Wanna Be Sedated | Cover | 4 |
| I Thought I Held You | A.M. | 2 |
| I Shall Be Released | Alpha Mike Foxtrot: Rare Tracks 1994-2014 | 19 |
| I Must Be High | A.M. | 213 |
| I Might | The Whole Love | 141 |
| I Love My Label | Alpha Mike Foxtrot: Rare Tracks 1994-2014 | 7 |
| I Got You (At The End Of The Century) | Being There | 473 |
| I Got You | Cover | 3 |
| I Can't Keep From Talking | Weird Tales | 22 |
| I Am Trying To Break Your Heart | Yankee Hotel Foxtrot | 711 |
| Hummingbird | A Ghost Is Born | 434 |
| How To Fight Loneliness | Summerteeth | 191 |
| Hotel Arizona | Being There | 161 |
| Hoodoo Voodoo | Mermaid Avenue | 190 |
| Hesitation | | 2 |
| Hesitating Beauty | Mermaid Avenue | 272 |
| Henry & The H Bombs | Cover | 21 |
| Hello Cruel World | | 1 |
| Hell Is Chrome | A Ghost Is Born | 134 |
| Heavy Metal Drummer | Yankee Hotel Foxtrot | 573 |
| Hate It Here | Sky Blue Sky | 265 |
| Happy Birthday | | 18 |
| Handshake Drugs | A Ghost Is Born | 552 |
| Gut Feeling / Slap Your Mammy | Cover | 1 |
| Gun | Still Feel Gone | 84 |
| Give Back The Key To My Heart | Anodyne | 39 |
| Forget The Flowers | Being There | 296 |
| Feed Of Man | Mermaid Avenue, Vol. 2 | 31 |
| Far, Far Away | Being There | 168 |
| Everybody Knows This Is Nowhere | | 2 |
| Everlasting Everything | Wilco (the album) | 8 |
| Ever Fallen In Love | Cover | 5 |
| Either Way | Sky Blue Sky | 42 |
| Easter Bunny ditty | | 1 |
| ELT | Summerteeth | 53 |
| Dueling Banjos | | 5 |
| Drown | Cover | 1 |
| Dreamer In My Dreams | Being There | 50 |
| Down In The Willow Garden | | 7 |
| Don't You Honey Me | Alpha Mike Foxtrot: Rare Tracks 1994-2014 | 22 |
| Deeper Down | Wilco (the album) | 54 |
| Dear Employer (The Reason I Quit) | Down With Wilco | 8 |
| Dead Flowers | | 1 |
| Dawned On Me | The Whole Love | 144 |
| Dash 7 | A.M. | 8 |
| Cruel To Be Kind | Cover | 9 |
| Country Disappeared | Wilco (the album) | 15 |
| Company In My Back | A Ghost Is Born | 191 |
| Comment (If All Men Are Truly Brothers) | Cover | 10 |