| The Community Song | | 8 | 0.3% | 6.6 | Apr 6, 2007 | Feb 14, 2014 | Rare |
| The Family Gardener | Down With Wilco | 8 | 0.4% | 10.6 | Apr 16, 2003 | Mar 23, 2019 | Rare |
| The Red Brick | Warm | 8 | 0.4% | 16.9 | Dec 22, 2021 | Jun 30, 2024 | Rare |
| You Were Wrong | Loose Fur | 8 | 0.4% | 10.8 | Dec 6, 2002 | Jan 24, 2007 | Rare |
| Ziggy Stardust [David Bowie] | Cover | 8 | 0.4% | 21 | Mar 29, 1997 | Aug 15, 1999 | Rare |
| 36 Inches High [Jim Ford] | Cover | 7 | 0.4% | 19.1 | Sep 25, 2011 | Oct 5, 2011 | Rare |
| A Long Time Ago | | 7 | 0.4% | 13.3 | May 16, 2003 | Jan 17, 2026 | Rare |
| Ain't It a Shame | Twilight Override | 7 | 0.4% | 11 | Apr 11, 2024 | Nov 9, 2025 | Rare |
| All The Same To Me | Weird Tales | 7 | 0.4% | 14.1 | Feb 28, 1999 | Feb 14, 2009 | Rare |
| Childlike and Evergreen | Alpha Mike Foxtrot: Rare Tracks 1994-2014 | 7 | 0.4% | 10.3 | Apr 14, 1995 | May 15, 2015 | Rare |
| Days Of Wine And Booze | Down With Wilco | 7 | 0.2% | 13 | Sep 15, 2001 | Apr 29, 2003 | Rare |
| Down from Above | Sukierae | 7 | 0.4% | 1 | Jun 5, 2014 | Jul 17, 2014 | Rare |
| I Love My Label [Nick Lowe] | Alpha Mike Foxtrot: Rare Tracks 1994-2014 | 7 | 0.4% | 17.4 | Jun 25, 2011 | Oct 5, 2011 | Rare |
| Millionaire | | 7 | 0.4% | 3.1 | Dec 6, 2002 | May 16, 2003 | Rare |
| New Wave Theater | | 7 | 0.4% | 5.4 | Apr 28, 2018 | Sep 20, 2018 | Rare |
| Please Be Wrong | Cruel Country | 7 | 0.4% | 9.7 | Jul 17, 2021 | Apr 30, 2023 | Rare |
| Simple Twist Of Fate [Bob Dylan] | Cover | 7 | 0.4% | 11 | Dec 10, 2008 | May 14, 2016 | Rare |
| Amar Bharati | Twilight Override | 6 | 0.3% | 13.7 | Apr 18, 2025 | Jan 8, 2026 | Rare |
| Friendship [Pops Staples] | Cover | 6 | 0.3% | 21.2 | Sep 18, 2020 | Jun 28, 2026 | Rare |
| God [John Lennon] | Cover | 6 | 0.3% | 25.3 | Dec 8, 2013 | Mar 28, 2015 | Rare |
| Happiness | Schmilco | 6 | 0.3% | 11 | Sep 6, 2016 | Jun 25, 2023 | Rare |
| Jesus Wept | | 6 | 0.3% | 7.7 | Dec 29, 2017 | May 31, 2024 | Rare |
| Message From Mid-Bar | | 6 | 0.3% | 5.7 | Mar 30, 2012 | Jun 28, 2024 | Rare |
| Monkey Mess | | 6 | 0.3% | 19.2 | Mar 3, 2001 | Mar 12, 2001 | Rare |
| Parking Lot | Twilight Override | 6 | 0.3% | 4 | Oct 8, 2025 | Jan 4, 2026 | Rare |
| She's My Rock [Sharon K Dobbins] | Cover | 6 | 0.2% | 20.7 | May 27, 2022 | Sep 27, 2023 | Rare |
| Tomorrow Never Knows [The Beatles] | Cover | 6 | 0.3% | 18.7 | Jul 14, 2013 | Jan 15, 2026 | Rare |
| Unknown??? | | 6 | 0.1% | 16.7 | Apr 30, 1999 | Jul 31, 2000 | Rare |
| Dueling Banjos | | 5 | 0.3% | 22.4 | Apr 30, 1997 | Feb 17, 1999 | Rare |
| Ever Fallen In Love [The Buzzcocks] | Cover | 5 | 0.3% | 19.8 | Oct 30, 1997 | Nov 18, 1997 | Rare |
| Fake Plastic Trees [Radiohead] | Cover | 5 | 0.3% | 18.8 | Jan 29, 2009 | Mar 27, 2009 | Rare |
| How Hard It Is for a Desert to Die | Warm | 5 | 0.3% | 10.4 | Dec 1, 2018 | Jun 30, 2024 | Rare |
| I Wish My Baby Was Born | March 16-20, 1992 | 5 | 0.3% | 14 | Mar 26, 1998 | Mar 30, 2012 | Rare |
| Intro | | 5 | 0.3% | 1 | Jun 4, 1995 | May 26, 2002 | Rare |
| It Must Be Love [Labi Siffre] | Cover | 5 | 0.3% | 20 | Feb 28, 2019 | May 29, 2022 | Rare |
| Losing Traction | | 5 | 0.3% | 17.6 | Jun 27, 2026 | Jul 11, 2026 | Rare |
| Sad Kind of Way | Cruel Country | 5 | 0.3% | 12.6 | May 27, 2022 | Dec 15, 2024 | Rare |
| Sloth [Fairport Convention] | Cover | 5 | 0.3% | 8.2 | Jul 5, 2013 | Jul 15, 2013 | Rare |
| The Waiting [Tom Petty & The Heartbreakers] | Cover | 5 | 0.3% | 26 | Oct 3, 2017 | Oct 9, 2017 | Rare |
| Venus Stopped the Train | | 5 | 0.3% | 10.6 | Jan 6, 2023 | Dec 13, 2024 | Rare |
| Western Clear Skies | Twilight Override | 5 | 0.3% | 3.4 | Jun 30, 2024 | Jan 4, 2026 | Rare |
| Where My Love | Sukierae | 5 | 0.3% | 9.6 | Jun 5, 2014 | Jun 16, 2014 | Rare |
| Won't Get Fooled Again [The Who] | Cover | 5 | 0.3% | 23.2 | Nov 5, 1999 | Nov 19, 2000 | Rare |
| Bad Day Lately | Love Is the King | 4 | 0.2% | 3.8 | Sep 18, 2020 | Jan 19, 2022 | Rare |
| Daggers Drawn | Down With Wilco | 4 | 0.2% | 7.5 | Sep 15, 2001 | Apr 29, 2003 | Rare |
| Dead Flowers [The Rolling Stones] | Cover | 4 | 0.2% | 11.3 | Sep 4, 1995 | Oct 11, 2013 | Rare |
| Dreaming [Debbie Harry/Chris Stein (Blondie)] | Cover | 4 | 0.2% | 10.8 | Jun 14, 1999 | Jan 29, 2005 | Rare |
| I Wanna Be Sedated [The Ramones] | Cover | 4 | 0.2% | 21.8 | May 9, 1997 | Jun 14, 1997 | Rare |
| I Wanna Be Your Dog | | 4 | 0.2% | 10.3 | May 13, 1995 | Mar 26, 2009 | Rare |
| I Wanna Be Your Mama Again [Doug Sahm] | Cover | 4 | 0.2% | 21.5 | Jan 20, 2020 | Jun 4, 2021 | Rare |
| I'm Into Something Good [Carole King and Gerry Goffin] | Cover | 4 | 0.2% | 13.8 | Mar 26, 1998 | Mar 22, 2019 | Rare |
| I'm Not Bitter | Down With Wilco | 4 | 0.2% | 8.5 | Sep 15, 2001 | Apr 29, 2003 | Rare |
| Just Say Goodbye | Schmilco | 4 | 0.2% | 21 | Aug 6, 2016 | Jun 28, 2024 | Rare |
| Life Left Him There | Down With Wilco | 4 | 0.2% | 4.8 | Sep 15, 2001 | Apr 29, 2003 | Rare |
| Lyrical Stance | At the Organ | 4 | 0.2% | 23.3 | Sep 15, 2001 | Apr 29, 2003 | Rare |
| Reflections On A Crystal Wind [Richard & Mimi Farina] | Cover | 4 | 0.2% | 13.8 | Jul 9, 1997 | Sep 12, 2000 | Rare |
| Retrieval Of You | Down With Wilco | 4 | 0.2% | 5.8 | Sep 15, 2001 | Apr 29, 2003 | Rare |
| Sign of Life | Twilight Override | 4 | 0.2% | 4.3 | Oct 30, 2025 | Nov 11, 2025 | Rare |
| Ten Sentences | Warmer | 4 | 0.2% | 13 | Jun 30, 2019 | Jul 17, 2021 | Rare |
| That's Not The Way It's Done | Down With Wilco | 4 | 0.2% | 7.5 | Sep 15, 2001 | Apr 29, 2003 | Rare |
| The Town That Lost Its Groove Supply | Down With Wilco | 4 | 0.2% | 10.5 | Apr 16, 2003 | Apr 30, 2003 | Rare |
| The Weight [The Band] | Cover | 4 | 0.2% | 24.3 | Dec 12, 2011 | Jan 20, 2022 | Rare |
| Turn Around and Come Back To Me | | 4 | 0.2% | 11.5 | Jul 20, 1995 | Sep 10, 1995 | Rare |
| View From Below | Down With Wilco | 4 | 0.2% | 9 | Sep 15, 2001 | Apr 29, 2003 | Rare |
| Walk On [Neil Young] | Cover | 4 | 0.2% | 18.5 | Feb 25, 2006 | Aug 10, 2008 | Rare |
| Where Will You Go? | Down With Wilco | 4 | 0.2% | 10.8 | Sep 15, 2001 | Apr 29, 2003 | Rare |
| Yesterday [Paul McCartney] | Cover | 4 | 0.2% | 19.5 | Nov 23, 1997 | Nov 15, 1998 | Rare |
| ...And Then You Cut It in Half | Warmer | 3 | 0.2% | 12 | Jun 30, 2019 | Jan 20, 2020 | Rare |
| A Bowl and a Pudding | Cousin | 3 | 0.2% | 13.7 | Apr 11, 2024 | Oct 29, 2024 | Rare |
| Ain't No Doubt About It | | 3 | 0.2% | 12.3 | Sep 16, 2017 | Mar 1, 2022 | Rare |
| Can't Stand Yourself | Arabella | 3 | 0.2% | 5.7 | May 17, 2003 | Jan 23, 2004 | Rare |
| Cock In My Pocket [Iggy Pop (The Stooges)] | Cover | 3 | 0.2% | 18.3 | Nov 6, 1996 | Dec 2, 1996 | Rare |
| Death of the Last Stripper [Terry Allen] | Cover | 3 | 0.1% | 19.7 | Sep 15, 2022 | Oct 9, 2022 | Rare |
| Everybody Knows This Is Nowhere | | 3 | 0.2% | 18 | Sep 4, 1995 | Mar 31, 2016 | Rare |
| From Far Away | Warm | 3 | 0.2% | 10.7 | Jan 7, 2019 | Dec 13, 2024 | Rare |
| Heart Like a Wheel [Kate & Anna McGarrigle] | Cover | 3 | 0.2% | 5.7 | May 17, 2003 | Jan 23, 2004 | Rare |
| Hesitation | | 3 | 0.2% | 16 | Jun 14, 1995 | Aug 2, 2025 | Rare |
| I Got You [Split Enz] | Cover | 3 | 0.2% | 21.3 | Jan 29, 2005 | Jun 24, 2011 | Rare |
| I Still Miss Someone [Johnny Cash] | Cover | 3 | 0.2% | 12.3 | Apr 16, 2003 | May 17, 2003 | Rare |
| I'm Only Sleeping [Lennon/McCartney] | Cover | 3 | 0.2% | 21.7 | Jan 11, 1997 | Jan 29, 2005 | Rare |
| In Christ, There Is No East Or West | | 3 | 0.2% | 13.3 | Aug 16, 2006 | Oct 27, 2006 | Rare |
| Ingrid Bergman | Mermaid Avenue | 3 | 0.2% | 11 | Mar 26, 1998 | Jun 26, 2026 | Rare |
| Juniper | Arabella | 3 | 0.2% | 4.3 | May 17, 2003 | Jan 23, 2004 | Rare |
| Lies of the Living Dead | In Rock | 3 | 0.2% | 12.7 | Sep 15, 2001 | Apr 29, 2003 | Rare |
| Little Lies [Fleetwood Mac] | Cover | 3 | 0.2% | 9 | Dec 2, 2022 | Jan 6, 2023 | Rare |
| Lookin' For A Love [Neil Young] | Cover | 3 | 0.2% | 12.7 | Jan 4, 2000 | Apr 29, 2003 | Rare |
| Love Is for Love | Twilight Override | 3 | 0.2% | 8 | Oct 13, 2024 | Jan 8, 2026 | Rare |
| Marquee Moon [Television] | Cover | 3 | 0.2% | 16.3 | Jun 21, 2013 | Apr 16, 2019 | Rare |
| My Words | | 3 | 0.2% | 9 | May 16, 2003 | Nov 17, 2005 | Rare |
| new song (Let's Fight) | | 3 | 0.2% | 10.7 | Jul 13, 2006 | Aug 6, 2006 | Rare |
| One True Vine | Sky Blue Sky Tour EP | 3 | 0.2% | 13.3 | Dec 6, 2013 | Jan 5, 2023 | Rare |
| Say I Love You Again | | 3 | 0.2% | 6.7 | Sep 30, 2021 | Jan 6, 2023 | Rare |
| Say You Love Me | Hot Sun Cool Shroud | 3 | 0.2% | 13.3 | Jun 29, 2024 | Dec 7, 2024 | Rare |
| Shrug and Destroy | Schmilco | 3 | 0.2% | 13.7 | Aug 6, 2016 | Sep 9, 2016 | Rare |
| Sick Server | Warmer | 3 | 0.2% | 7 | Mar 12, 2019 | Apr 10, 2019 | Rare |
| So Long | Loose Fur | 3 | 0.2% | 4.3 | May 14, 2000 | Dec 7, 2002 | Rare |
| Sunloathe | The Whole Love | 3 | 0.2% | 10.3 | Mar 30, 2012 | Jun 28, 2024 | Rare |
| Ten Years Ago Today | Arabella | 3 | 0.2% | 1.7 | May 17, 2003 | Jan 23, 2004 | Rare |
| That's How I Got to Memphis [Tom T Hall] | Cover | 3 | 0.1% | 20.7 | Oct 9, 2022 | Oct 9, 2022 | Once |
| The Old Plantation | Down With Wilco | 3 | 0.2% | 7.7 | Apr 16, 2003 | Apr 29, 2003 | Rare |