| The Auld Triangle [Brendan Behan] | Cover | 14 | 0.7% | 8.5 | Nov 3, 1997 | Apr 6, 2007 | Rare |
| Everlasting Everything | Wilco (the album) | 13 | 0.7% | 9.3 | Jan 29, 2009 | Oct 30, 2024 | Rare |
| Honey Combed | Sukierae | 13 | 0.7% | 5.2 | Jun 5, 2014 | Mar 24, 2015 | Rare |
| In The Street [Big Star] | Cover | 13 | 0.7% | 24.8 | Oct 10, 2009 | Jul 7, 2026 | Rare |
| Levee | Cousin | 13 | 0.7% | 7.2 | Oct 6, 2023 | Dec 13, 2024 | Rare |
| Mirror | Twilight Override | 13 | 0.7% | 10.6 | Oct 8, 2025 | Jun 28, 2026 | Rare |
| New Orleans | Twilight Override | 13 | 0.7% | 15 | Oct 8, 2025 | Jun 28, 2026 | Rare |
| Cinnamon Girl [Neil Young] | Cover | 12 | 0.6% | 18.3 | Jun 21, 2013 | Nov 23, 2019 | Rare |
| Cry Baby Cry | Twilight Override | 12 | 0.6% | 9.6 | Dec 4, 2023 | Jun 28, 2026 | Rare |
| Out in the Dark | Twilight Override | 12 | 0.6% | 12.6 | Oct 8, 2025 | Jun 28, 2026 | Rare |
| Betrayed | Twilight Override | 11 | 0.6% | 2 | Oct 4, 2025 | Nov 12, 2025 | Rare |
| Broken Arrow [Buffalo Springfield] | Cover | 11 | 0.6% | 21.5 | Feb 7, 2010 | May 6, 2010 | Rare |
| Mystery Binds | Cruel Country | 11 | 0.6% | 12.9 | May 27, 2022 | Aug 27, 2023 | Rare |
| No More Poetry | Alpha Mike Foxtrot: Rare Tracks 1994-2014 | 11 | 0.6% | 10.7 | Nov 15, 1998 | May 13, 2016 | Rare |
| Nope | Schmilco | 11 | 0.6% | 13.8 | Aug 6, 2016 | Sep 15, 2016 | Rare |
| Promising | Chelsea Walls | 11 | 0.6% | 12.9 | Dec 29, 1994 | Oct 28, 2014 | Rare |
| Save It for Me | Love Is the King | 11 | 0.6% | 11.2 | Sep 18, 2020 | Jul 24, 2025 | Rare |
| Soldier Child | Cousin | 11 | 0.6% | 7.9 | Sep 29, 2023 | Apr 12, 2024 | Rare |
| Solitaire | Wilco (the album) | 11 | 0.6% | 4.7 | Jan 29, 2009 | Mar 25, 2015 | Rare |
| Sunlight Ends | Cousin | 11 | 0.6% | 9 | Oct 5, 2023 | Apr 18, 2025 | Rare |
| Warm (When the Sun Has Died) | Warm | 11 | 0.6% | 13.9 | Sep 28, 2018 | Jun 30, 2024 | Rare |
| Wherever | | 11 | 0.6% | 21.1 | Nov 21, 1994 | Mar 31, 2012 | Rare |
| Comment (If All Men Are Truly Brothers) [Charles Wright and the Watts 103rd St. Rhythm Band] | Cover | 10 | 0.5% | 23.8 | Dec 30, 2004 | May 7, 2005 | Rare |
| Cruel To Be Kind [Nick Lowe] | Cover | 10 | 0.5% | 25.1 | Oct 29, 2011 | Dec 12, 2011 | Rare |
| Dark Neon | Alpha Mike Foxtrot: Rare Tracks 1994-2014 | 10 | 0.5% | 17.7 | Dec 6, 2014 | Jan 18, 2026 | Rare |
| Love Is the King | Love Is the King | 10 | 0.5% | 5 | Jun 4, 2021 | Jun 28, 2026 | Rare |
| More Like The Moon | More Like The Moon EP | 10 | 0.5% | 13.2 | Apr 28, 2003 | Apr 18, 2025 | Rare |
| No One's Moving On | Twilight Override | 10 | 0.5% | 17.8 | Oct 29, 2025 | Jun 28, 2026 | Rare |
| Orphan | Warmer | 10 | 0.5% | 8.9 | Dec 1, 2018 | Oct 29, 2024 | Rare |
| Slow Love | Sukierae | 10 | 0.5% | 9.2 | Jun 5, 2014 | Mar 6, 2015 | Rare |
| Tonight I'll Be Staying Here With You [Bob Dylan] | Cover | 10 | 0.4% | 10 | Sep 30, 2021 | Sep 27, 2023 | Rare |
| Dash 7 | A.M. | 9 | 0.5% | 15.1 | Dec 29, 1994 | Dec 9, 2014 | Rare |
| Dear Employer (The Reason I Quit) | Down With Wilco | 9 | 0.5% | 16.7 | Jan 6, 2003 | Apr 18, 2025 | Rare |
| Ripple [Grateful Dead] | Cover | 9 | 0.5% | 12.9 | Jun 14, 1999 | Oct 30, 2014 | Rare |
| So Much Wine (Butterfly) [The Handsome Family] | Cover | 9 | 0.5% | 11.1 | Aug 18, 2006 | May 13, 2016 | Rare |
| Twilight Override | Twilight Override | 9 | 0.5% | 21.6 | Oct 8, 2025 | Nov 12, 2025 | Rare |
| Color Me Impressed [The Replacements] | Cover | 8 | 0.4% | 21.5 | Feb 27, 1997 | Jun 21, 2013 | Rare |
| Down In The Willow Garden | | 8 | 0.4% | 14.9 | Aug 30, 1998 | Mar 31, 2012 | Rare |
| Helpless [Neil Young] | Cover | 8 | 0.4% | 22 | Jan 19, 2022 | Oct 10, 2025 | Rare |
| I Wish I Was Your Mother [Ian Hunter (Mott the Hoople)] | Cover | 8 | 0.4% | 18.6 | Oct 22, 1996 | Jul 26, 2013 | Rare |
| Natural Disaster | Love Is the King | 8 | 0.4% | 14.3 | Sep 18, 2020 | Oct 29, 2024 | Rare |
| Oklahoma USA [The Kinks] | Cover | 8 | 0.4% | 19.8 | Jan 11, 1997 | Apr 22, 2017 | Rare |
| Space Oddity [David Bowie] | Cover | 8 | 0.4% | 26.3 | Feb 5, 2016 | May 14, 2016 | Rare |
| The Community Song | | 8 | 0.3% | 6.6 | Apr 6, 2007 | Feb 14, 2014 | Rare |
| The Family Gardener | Down With Wilco | 8 | 0.4% | 10.6 | Apr 16, 2003 | Mar 23, 2019 | Rare |
| The Red Brick | Warm | 8 | 0.4% | 16.9 | Dec 22, 2021 | Jun 30, 2024 | Rare |
| You Were Wrong | Loose Fur | 8 | 0.4% | 10.8 | Dec 6, 2002 | Jan 24, 2007 | Rare |
| Ziggy Stardust [David Bowie] | Cover | 8 | 0.4% | 21 | Mar 29, 1997 | Aug 15, 1999 | Rare |
| 36 Inches High [Jim Ford] | Cover | 7 | 0.4% | 19.1 | Sep 25, 2011 | Oct 5, 2011 | Rare |
| A Long Time Ago | | 7 | 0.4% | 13.3 | May 16, 2003 | Jan 17, 2026 | Rare |
| Ain't It a Shame | Twilight Override | 7 | 0.4% | 11 | Apr 11, 2024 | Nov 9, 2025 | Rare |
| All The Same To Me | Weird Tales | 7 | 0.4% | 14.1 | Feb 28, 1999 | Feb 14, 2009 | Rare |
| Childlike and Evergreen | Alpha Mike Foxtrot: Rare Tracks 1994-2014 | 7 | 0.4% | 10.3 | Apr 14, 1995 | May 15, 2015 | Rare |
| Days Of Wine And Booze | Down With Wilco | 7 | 0.2% | 13 | Sep 15, 2001 | Apr 29, 2003 | Rare |
| Down from Above | Sukierae | 7 | 0.4% | 1 | Jun 5, 2014 | Jul 17, 2014 | Rare |
| I Love My Label [Nick Lowe] | Alpha Mike Foxtrot: Rare Tracks 1994-2014 | 7 | 0.4% | 17.4 | Jun 25, 2011 | Oct 5, 2011 | Rare |
| Millionaire | | 7 | 0.4% | 3.1 | Dec 6, 2002 | May 16, 2003 | Rare |
| New Wave Theater | | 7 | 0.4% | 5.4 | Apr 28, 2018 | Sep 20, 2018 | Rare |
| Please Be Wrong | Cruel Country | 7 | 0.4% | 9.7 | Jul 17, 2021 | Apr 30, 2023 | Rare |
| Simple Twist Of Fate [Bob Dylan] | Cover | 7 | 0.4% | 11 | Dec 10, 2008 | May 14, 2016 | Rare |
| Amar Bharati | Twilight Override | 6 | 0.3% | 13.7 | Apr 18, 2025 | Jan 8, 2026 | Rare |
| Friendship [Pops Staples] | Cover | 6 | 0.3% | 21.2 | Sep 18, 2020 | Jun 28, 2026 | Rare |
| God [John Lennon] | Cover | 6 | 0.3% | 25.3 | Dec 8, 2013 | Mar 28, 2015 | Rare |
| Happiness | Schmilco | 6 | 0.3% | 11 | Sep 6, 2016 | Jun 25, 2023 | Rare |
| Jesus Wept | | 6 | 0.3% | 7.7 | Dec 29, 2017 | May 31, 2024 | Rare |
| Message From Mid-Bar | | 6 | 0.3% | 5.7 | Mar 30, 2012 | Jun 28, 2024 | Rare |
| Monkey Mess | | 6 | 0.3% | 19.2 | Mar 3, 2001 | Mar 12, 2001 | Rare |
| Parking Lot | Twilight Override | 6 | 0.3% | 4 | Oct 8, 2025 | Jan 4, 2026 | Rare |
| She's My Rock [Sharon K Dobbins] | Cover | 6 | 0.2% | 20.7 | May 27, 2022 | Sep 27, 2023 | Rare |
| Tomorrow Never Knows [The Beatles] | Cover | 6 | 0.3% | 18.7 | Jul 14, 2013 | Jan 15, 2026 | Rare |
| Unknown??? | | 6 | 0.1% | 16.7 | Apr 30, 1999 | Jul 31, 2000 | Rare |
| Dueling Banjos | | 5 | 0.3% | 22.4 | Apr 30, 1997 | Feb 17, 1999 | Rare |
| Ever Fallen In Love [The Buzzcocks] | Cover | 5 | 0.3% | 19.8 | Oct 30, 1997 | Nov 18, 1997 | Rare |
| Fake Plastic Trees [Radiohead] | Cover | 5 | 0.3% | 18.8 | Jan 29, 2009 | Mar 27, 2009 | Rare |
| How Hard It Is for a Desert to Die | Warm | 5 | 0.3% | 10.4 | Dec 1, 2018 | Jun 30, 2024 | Rare |
| I Wish My Baby Was Born | March 16-20, 1992 | 5 | 0.3% | 14 | Mar 26, 1998 | Mar 30, 2012 | Rare |
| Intro | | 5 | 0.3% | 1 | Jun 4, 1995 | May 26, 2002 | Rare |
| It Must Be Love [Labi Siffre] | Cover | 5 | 0.3% | 20 | Feb 28, 2019 | May 29, 2022 | Rare |
| Losing Traction | | 5 | 0.3% | 17.6 | Jun 27, 2026 | Jul 11, 2026 | Rare |
| Sad Kind of Way | Cruel Country | 5 | 0.3% | 12.6 | May 27, 2022 | Dec 15, 2024 | Rare |
| Sloth [Fairport Convention] | Cover | 5 | 0.3% | 8.2 | Jul 5, 2013 | Jul 15, 2013 | Rare |
| The Waiting [Tom Petty & The Heartbreakers] | Cover | 5 | 0.3% | 26 | Oct 3, 2017 | Oct 9, 2017 | Rare |
| Venus Stopped the Train | | 5 | 0.3% | 10.6 | Jan 6, 2023 | Dec 13, 2024 | Rare |
| Western Clear Skies | Twilight Override | 5 | 0.3% | 3.4 | Jun 30, 2024 | Jan 4, 2026 | Rare |
| Where My Love | Sukierae | 5 | 0.3% | 9.6 | Jun 5, 2014 | Jun 16, 2014 | Rare |
| Won't Get Fooled Again [The Who] | Cover | 5 | 0.3% | 23.2 | Nov 5, 1999 | Nov 19, 2000 | Rare |
| Bad Day Lately | Love Is the King | 4 | 0.2% | 3.8 | Sep 18, 2020 | Jan 19, 2022 | Rare |
| Daggers Drawn | Down With Wilco | 4 | 0.2% | 7.5 | Sep 15, 2001 | Apr 29, 2003 | Rare |
| Dead Flowers [The Rolling Stones] | Cover | 4 | 0.2% | 11.3 | Sep 4, 1995 | Oct 11, 2013 | Rare |
| Dreaming [Debbie Harry/Chris Stein (Blondie)] | Cover | 4 | 0.2% | 10.8 | Jun 14, 1999 | Jan 29, 2005 | Rare |
| I Wanna Be Sedated [The Ramones] | Cover | 4 | 0.2% | 21.8 | May 9, 1997 | Jun 14, 1997 | Rare |
| I Wanna Be Your Dog | | 4 | 0.2% | 10.3 | May 13, 1995 | Mar 26, 2009 | Rare |
| I Wanna Be Your Mama Again [Doug Sahm] | Cover | 4 | 0.2% | 21.5 | Jan 20, 2020 | Jun 4, 2021 | Rare |
| I'm Into Something Good [Carole King and Gerry Goffin] | Cover | 4 | 0.2% | 13.8 | Mar 26, 1998 | Mar 22, 2019 | Rare |
| I'm Not Bitter | Down With Wilco | 4 | 0.2% | 8.5 | Sep 15, 2001 | Apr 29, 2003 | Rare |
| Just Say Goodbye | Schmilco | 4 | 0.2% | 21 | Aug 6, 2016 | Jun 28, 2024 | Rare |
| Life Left Him There | Down With Wilco | 4 | 0.2% | 4.8 | Sep 15, 2001 | Apr 29, 2003 | Rare |
| Lyrical Stance | At the Organ | 4 | 0.2% | 23.3 | Sep 15, 2001 | Apr 29, 2003 | Rare |
| Reflections On A Crystal Wind [Richard & Mimi Farina] | Cover | 4 | 0.2% | 13.8 | Jul 9, 1997 | Sep 12, 2000 | Rare |
| Retrieval Of You | Down With Wilco | 4 | 0.2% | 5.8 | Sep 15, 2001 | Apr 29, 2003 | Rare |