| (Don't Fear) The Reaper | Cover | 15 |
| (Was I) In Your Dreams | Being There | 77 |
| 100 Years From Now | Cover | 2 |
| 36 Inches High | Cover | 7 |
| A Beard Of Stars | Cover | 2 |
| A Fool Such As I | Cover | 2 |
| A Long Time Ago | | 1 |
| A Magazine Called Sunset | More Like The Moon EP | 52 |
| A Shot In The Arm | Summerteeth | 831 |
| Acuff-Rose | Anodyne | 97 |
| Ain't Much To Say | | 1 |
| Airline To Heaven | Mermaid Avenue, Vol. 2 | 216 |
| All The Same To Me | Weird Tales | 7 |
| All The Young Dudes | Cover | 1 |
| Alone | | 5 |
| Anarchy In The UK | Cover | 1 |
| Another Man's Done Gone | | 28 |
| Answers | | 2 |
| Any Major Dude Will Tell You | Cover | 1 |
| Art of Almost | The Whole Love | 138 |
| Ashes Of American Flags | Yankee Hotel Foxtrot | 247 |
| At Least That's What You Said | A Ghost Is Born | 330 |
| At My Window Sad And Lonely | Mermaid Avenue | 18 |
| Auld Lang Syne | | 1 |
| Baba O'Riley | Cover | 1 |
| Barstool Blues | | 1 |
| Be Not So Fearful | Cover | 46 |
| Black Eye | March 16-20, 1992 | 47 |
| Black Moon | The Whole Love | 43 |
| Blasting Fonda | | 20 |
| Blood Of The Lamb | Mermaid Avenue, Vol. 2 | 29 |
| Blue Eyed Soul | A.M. | 11 |
| Bob Dylan's 49th Beard | More Like The Moon EP | 109 |
| Boeing Spacearium | | 1 |
| Born Alone | The Whole Love | 143 |
| Box Full Of Letters | A.M. | 240 |
| Broken Arrow | Cover | 11 |
| Bull Black Nova | Wilco (the album) | 157 |
| Cajun Angel | | 1 |
| California Stars | Mermaid Avenue | 570 |
| Camera | More Like The Moon EP | 1 |
| Can't Stand It | Summerteeth | 151 |
| Can't Stand Yourself | Arabella | 3 |
| Can't Stop Talking | | 2 |
| Candyfloss | Summerteeth | 88 |
| Capitol City | The Whole Love | 49 |
| Cars Can't Escape | | 34 |
| Casino Queen | A.M. | 334 |
| Chelsea Walls Theme | Chelsea Walls | 2 |
| Childlike and Evergreen | | 5 |
| Chinese Apple | Loose Fur | 14 |
| Christ For President | Mermaid Avenue | 134 |
| Cock In My Pocket | Cover | 3 |
| Cold Shoulder | Still Feel Gone | 1 |
| Cold Turkey | | 2 |
| Colon Song | | 1 |
| Color Me Impressed | Cover | 7 |
| Come Together | Cover | 2 |
| Comment (If All Men Are Truly Brothers) | Cover | 10 |
| Company In My Back | A Ghost Is Born | 191 |
| Country Disappeared | Wilco (the album) | 15 |
| Cruel To Be Kind | Cover | 9 |
| Dad Says | | 1 |
| Daggers Drawn | Down With Wilco | 4 |
| Dash 7 | A.M. | 8 |
| Dawned On Me | The Whole Love | 144 |
| Days Of Wine And Booze | Down With Wilco | 7 |
| Dead Flowers | | 1 |
| Dear Employer (The Reason I Quit) | Down With Wilco | 8 |
| Deeper Down | Wilco (the album) | 54 |
| Dirty Old Town | Cover | 1 |
| Don't You Honey Me | | 22 |
| Down In The Willow Garden | | 7 |
| Dreamer In My Dreams | Being There | 50 |
| Dreaming | Cover | 4 |
| Drown | Cover | 1 |
| Dueling Banjos | | 5 |
| ELT | Summerteeth | 53 |
| Easter Bunny ditty | | 1 |
| Either Way | Sky Blue Sky | 42 |
| Elegant Transaction | Loose Fur | 2 |
| Ever Fallen In Love | Cover | 5 |
| Everlasting Everything | Wilco (the album) | 8 |
| Everybody Knows This Is Nowhere | | 2 |
| Fake Plastic Trees | Cover | 5 |
| Far, Far Away | Being There | 168 |
| Fatal Wound | March 16-20, 1992 | 1 |
| Feed Of Man | Mermaid Avenue, Vol. 2 | 31 |
| Forget The Flowers | Being There | 296 |
| Froggie Went A Courtin' | | 1 |
| Give Back The Key To My Heart | Anodyne | 39 |
| Goodnight Irene | Cover | 1 |
| Gun | Still Feel Gone | 84 |
| Gut Feeling / Slap Your Mammy | Cover | 1 |
| Handshake Drugs | A Ghost Is Born | 552 |
| Hank, Karen, and Elvis | | 1 |
| Happy Birthday | | 18 |
| Hate It Here | Sky Blue Sky | 265 |
| Heart Like a Wheel | | 3 |
| Heavy Metal Drummer | Yankee Hotel Foxtrot | 573 |
| Hell Is Chrome | A Ghost Is Born | 134 |
| Hello Cruel World | | 1 |
| Henry & The H Bombs | Cover | 21 |
| Hesitating Beauty | Mermaid Avenue | 272 |
| Hesitation | | 2 |
| Hey Chicken | | 1 |
| Hillbilly Drummer Girl | | 1 |
| Hoodoo Voodoo | Mermaid Avenue | 190 |
| Hotel Arizona | Being There | 161 |
| How To Fight Loneliness | Summerteeth | 191 |
| Hummingbird | A Ghost Is Born | 434 |
| I Am Trying To Break Your Heart | Yankee Hotel Foxtrot | 711 |
| I Can't Keep From Talking | Weird Tales | 22 |
| I Got You | Cover | 3 |
| I Got You (At The End Of The Century) | Being There | 473 |
| I Love My Label | Cover | 7 |
| I Might | The Whole Love | 141 |
| I Must Be High | A.M. | 213 |
| I Shall Be Released | Cover | 19 |
| I Still Miss Someone | | 3 |
| I Thought I Held You | A.M. | 2 |
| I Threw It All Away | | 1 |
| I Wanna Be Sedated | Cover | 4 |
| I Wanna Be Your Dog | | 4 |
| I Want You To Want Me | Cover | 1 |
| I Wish I Was Your Mother | Cover | 7 |
| I Wish My Baby Was Born | March 16-20, 1992 | 4 |
| I'll Fight | Wilco (the album) | 53 |
| I'm A Wheel | A Ghost Is Born | 294 |
| I'm Always In Love | Summerteeth | 376 |
| I'm Beginning To See The Light | Cover | 2 |
| I'm Going Home | | 1 |
| I'm Into Something Good | Cover | 3 |
| I'm Not Bitter | Down With Wilco | 4 |
| I'm Only Sleeping | Cover | 3 |
| I'm The Man Who Loves You | Yankee Hotel Foxtrot | 829 |
| If That's Alright | Still Feel Gone | 21 |
| Immigrant Song | Cover | 27 |
| Impossible Germany | Sky Blue Sky | 417 |
| In A Future Age | Summerteeth | 44 |
| In Christ, There Is No East Or West | | 3 |
| In The Street | Cover | 8 |
| Ingrid Bergman | Mermaid Avenue | 2 |
| Interview | | 22 |
| Intro | | 5 |
| It's Just That Simple | A.M. | 59 |
| Jacob's Ladder | | 1 |
| James Alley Blues | Cover | 30 |
| Jesus, Etc. | Yankee Hotel Foxtrot | 671 |
| John Wesley Harding | Cover | 14 |
| Jumping Jack Flash | Cover | 1 |
| Juniper | Arabella | 3 |
| Just A Kid | The SpongeBob SquarePants Movie | 14 |
| Just Wanted to Thank You | | 2 |
| Kamera | Yankee Hotel Foxtrot | 215 |
| Kicking Television | A Ghost Is Born | 55 |
| King of Carrot Flowers, Pt. 1 | Cover | 1 |
| Kingpin | Being There | 332 |
| Kingsport Town | Cover | 1 |
| Laminated Cat | Loose Fur | 66 |
| Leave Me (Like You Found Me) | Sky Blue Sky | 1 |
| Less Than You Think | A Ghost Is Born | 62 |
| Let's Hear It For Rock and Roll | | 18 |
| Let's Not Get Carried Away | Sky Blue Sky Tour EP | 16 |
| Lies of the Living Dead | | 3 |
| Life Left Him There | Down With Wilco | 4 |
| Listen To Her Heart | Cover | 21 |
| Livin' After Midnight | Cover | 1 |
| Lookin' For A Love | Cover | 3 |
| Losing End | | 3 |
| Lost Love | Weird Tales | 21 |
| Love & Mercy | Cover | 2 |
| Love Will Keep Us Together | Cover | 2 |
| Lyrical Stance | | 4 |
| Mellow My Mind | | 1 |
| Mendocino | Cover | 1 |
| Merciful Night | | 2 |
| Midnight Special | | 1 |
| Millionaire | | 7 |
| Misunderstood | Being There | 477 |
| Modern World | | 1 |
| Monday | Being There | 333 |
| Monkey Mess | | 6 |
| More Like The Moon | More Like The Moon EP | 8 |
| Muzzle Of Bees | A Ghost Is Born | 260 |
| My Darling | Summerteeth | 45 |
| My Words | | 3 |
| New Madrid | Anodyne | 275 |
| New Years Countdown | | 1 |
| No Church Tonight | | 1 |
| No Depression | No Depression | 1 |
| No Matter What | Cover | 1 |
| No More Poetry | | 5 |
| No Romance | | 1 |
| No Sense In Lovin' | Anodyne | 24 |
| Not For The Season | | 149 |
| Nothing'severgonnastandinmyway(again) | Summerteeth | 87 |
| Oklahoma USA | Cover | 6 |
| Old Maid | | 2 |
| On And On And On | Sky Blue Sky | 41 |
| One By One | Mermaid Avenue | 120 |
| One More Night | | 1 |
| One Sunday Morning (Song For Jane Smiley's Boyfriend) | The Whole Love | 75 |
| One Wing | Wilco (the album) | 159 |
| Open Mind | The Whole Love | 11 |
| Out On The Weekend | Cover | 1 |
| Outta Mind (Outta Sight) | Being There | 93 |
| Outtasite (Outta Mind) | Being There | 426 |
| Outtro | | 1 |
| Panthers (Proving Death Again) | | 2 |
| Paranoid | Cover | 2 |
| Passenger Side | A.M. | 406 |
| Peace In The Valley | | 1 |
| Pecan Pie | Down By The Old Mainstream | 53 |
| Person I Used To Be | | 1 |
| Pick Up The Change | A.M. | 130 |
| Pieholden Suite | Summerteeth | 24 |
| Pink Moon | Cover | 1 |
| Piss It Away | | 2 |
| Please Be Patient With Me | Sky Blue Sky | 13 |
| Please Tell My Brother | Weird Tales | 53 |
| Political Science | Cover | 22 |
| Poor Places | Yankee Hotel Foxtrot | 329 |
| Pot Kettle Black | Yankee Hotel Foxtrot | 196 |
| Promising | Chelsea Walls | 9 |
| Psycho Killer | Cover | 1 |
| Radio Cure | Yankee Hotel Foxtrot | 139 |
| Radio King | Down By The Old Mainstream | 26 |
| Rainbow Connection | Cover | 1 |
| Red-Eyed And Blue | Being There | 392 |
| Reflections On A Crystal Wind | Cover | 4 |
| Reincarnation | Cover | 20 |
| Remember The Mountain Bed | Mermaid Avenue, Vol. 2 | 154 |
| Reservations | Yankee Hotel Foxtrot | 198 |
| Retrieval Of You | Down With Wilco | 4 |
| Ripple | Cover | 5 |
| Rising Red Lung | The Whole Love | 21 |
| Rock Salt And Nails | Cover | 1 |
| Rock n Roll Queen | | 1 |
| Sally Free And Easy | Cover | 1 |
| Sandusky | March 16-20, 1992 | 2 |
| Satan, Your Kingdom Must Come Down | March 16-20, 1992 | 23 |
| Save My Ass | | 1 |
| Say You Miss Me | Being There | 47 |
| Screen Door | No Depression | 23 |
| Secret Of The Sea | Mermaid Avenue, Vol. 2 | 21 |
| Shake It Off | Sky Blue Sky | 44 |
| She's A Jar | Summerteeth | 319 |
| Should I Stay Or Should I Go? | Cover | 1 |
| Should've Been In Love | A.M. | 74 |